🌺 Projects 🌺

Conference Presentations

BAN Monteiro, CKP Yuson, KUEB Antonio, M Arguelles, LJR Dela Cruz, JGC Angeles. July 2024. Methylome Analysis of Tawilis (Sardinella tawilis) Utilizing Various Reference Genomes Using Bowtie2. National Academy of Science and Technology Philippines Annual Scientific Meeting. Manila, Philippines. [Link to poster]
KUEB Antonio, M Arguelles, BAN Monteiro, CKP Yuson, LJR Dela Cruz, MRU Anacleto, AJ Jacildo, NO Villa, CDO Calapit-Palao, JGC Angeles. June 2024. Methylome Analysis of Sardinella tawilis Osmoregulatory Organs Reveal Insights into Its Freshwater Adaptation. Plant and Animal Genome Conference - Asia. Shenzhen, China. [Link to poster]
M Arguelles, KUEB Antonio, BAN Monteiro, CKP Yuson, MRU Anacleto, NO Villa, CDO Calapit-Palao, JGC Angeles. April 2024. Comparative Analyses of Bioinformatics Pipelines for Sardinella tawilis Methylomes in Relation to Environmental Adaptation. Taal Research Summit. Batangas, Philippines. [Link to poster]
KUEB Antonio, M Arguelles, CKP Yuson, BAN Monteiro, MRU Anacleto, JGC Angeles. November 2023. Trimming and Alignment of Tawilis Sardinella tawilis Gill Whole Genome Bisulfite Sequences. Philippine Society of Biochemistry and Molecular Biology Annual Convention. Manila, Philippines. [Link to poster]
M Arguelles, KUEB Antonio, MRU Anacleto, JGC Angeles. November 2022. Comparison of Bioinformatics Pipelines to Analyze Fish Methylomes in Relation to Environmental Adaptation. Philippine Society of Biochemistry and Molecular Biology Annual Convention. Bukidnon, Philippines (Virtual Conference). [Link to poster]


Bioinformatics

Tawilis Notebook: Documentation of bioinformatics processes for the Tawilis Multi-omics Project.
Ongoing project.
[Link to repository]
Marine and Freshwater Stickleback Methylation.
Under the guidance of Dr. Jorge Gil Angeles.
Technologies: Shell scripting, Python, Bismark, BSBolt, BWA-Meth, MethylDackel, FastQC, Fastp
[Link to repository]
Workflow for Methylation Analysis.
Under the guidance of Mr. El King Morado.
Technologies: Shell scripting, Python, LaTeX, Bismark, Fastp
[Link to repository]


Game Development

Unconditional.
Exhibited at the Esports and Gaming Summit 2019 (School Track, Indie Fiesta).
Technologies: C#, Unity
[Link to project]
Tiny game collection.
[tofumeow.itch.io]


Public Class Projects

Traffic Jam Assist. CSE 425: Software Engineering (Michigan State University).
Technologies: Unity, Shell scripting
Groupmates: Rondy Gonzalez, Charley Akers, Garrett Feinauer, Tara Younessi
[Website]
SHACker: Student record verfiication system. CMSC128: Introduction to Software Engineering.
Selected as database lead.
Technologies: MongoDB, Express, React, Node.js
Groupmates: Red Hizon (project manager), Jenel Justo (backend lead), Gem Almendrala (frontend lead), Serena Lee, Heinrich Austria, Jaeser Avila, Christian Pascua, Joan Paelden, Jeano Duhaylungsod, Cid Ceradoy, Paul Fuentes
[Link to repository]
Bacterial Diversity of Bat Guano. CMSC191: Special Topics (Bioinformatics)
Technologies: Plotly, Krona
Groupmates: Karl Brazil, Ron Calderon, Allyza Conde, Justin Macam, Mark Mercado, Lanze Racho, Francesca Tolentino
[Link to repository]


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Projects

Conference Presentations

BAN Monteiro, CKP Yuson, KUEB Antonio, M Arguelles, LJR Dela Cruz, JGC Angeles. July 2024. Methylome Analysis of Tawilis (Sardinella tawilis) Utilizing Various Reference Genomes Using Bowtie2. National Academy of Science and Technology Philippines Annual Scientific Meeting. Manila, Philippines. [Link to poster]
KUEB Antonio, M Arguelles, BAN Monteiro, CKP Yuson, LJR Dela Cruz, MRU Anacleto, AJ Jacildo, NO Villa, CDO Calapit-Palao, JGC Angeles. June 2024. Methylome Analysis of Sardinella tawilis Osmoregulatory Organs Reveal Insights into Its Freshwater Adaptation. Plant and Animal Genome Conference - Asia. Shenzhen, China. [Link to poster]
M Arguelles, KUEB Antonio, BAN Monteiro, CKP Yuson, MRU Anacleto, NO Villa, CDO Calapit-Palao, JGC Angeles. April 2024. Comparative Analyses of Bioinformatics Pipelines for Sardinella tawilis Methylomes in Relation to Environmental Adaptation. Taal Research Summit. Batangas, Philippines. [Link to poster]
KUEB Antonio, M Arguelles, CKP Yuson, BAN Monteiro, MRU Anacleto, JGC Angeles. November 2023. Trimming and Alignment of Tawilis Sardinella tawilis Gill Whole Genome Bisulfite Sequences. Philippine Society of Biochemistry and Molecular Biology Annual Convention. Manila, Philippines. [Link to poster]
M Arguelles, KUEB Antonio, MRU Anacleto, JGC Angeles. November 2022. Comparison of Bioinformatics Pipelines to Analyze Fish Methylomes in Relation to Environmental Adaptation. Philippine Society of Biochemistry and Molecular Biology Annual Convention. Bukidnon, Philippines (Virtual Conference). [Link to poster]


Bioinformatics

Tawilis Notebook: Documentation of bioinformatics processes for the Tawilis Multi-omics Project.
Ongoing project.
[Link to repository]
Marine and Freshwater Stickleback Methylation.
Under the guidance of Dr. Jorge Gil Angeles.
Technologies: Shell scripting, Python, Bismark, BSBolt, BWA-Meth, MethylDackel, FastQC, Fastp
[Link to repository]
Workflow for Methylation Analysis.
Under the guidance of Mr. El King Morado.
Technologies: Shell scripting, Python, LaTeX, Bismark, Fastp
[Link to repository]


Game Development

Unconditional.
Exhibited at the Esports and Gaming Summit 2019 (School Track, Indie Fiesta).
Technologies: C#, Unity
[Link to project]
Tiny game collection.
[tofumeow.itch.io]


Public Class Projects

Traffic Jam Assist. CSE 425: Software Engineering (Michigan State University).
Technologies: Unity, Shell scripting
Groupmates: Rondy Gonzalez, Charley Akers, Garrett Feinauer, Tara Younessi
[Website]
SHACker: Student record verfiication system. CMSC128: Introduction to Software Engineering.
Selected as database lead.
Technologies: MongoDB, Express, React, Node.js
Groupmates: Red Hizon (project manager), Jenel Justo (backend lead), Gem Almendrala (frontend lead), Serena Lee, Heinrich Austria, Jaeser Avila, Christian Pascua, Joan Paelden, Jeano Duhaylungsod, Cid Ceradoy, Paul Fuentes
[Link to repository]
Bacterial Diversity of Bat Guano. CMSC191: Special Topics (Bioinformatics)
Technologies: Plotly, Krona
Groupmates: Karl Brazil, Ron Calderon, Allyza Conde, Justin Macam, Mark Mercado, Lanze Racho, Francesca Tolentino
[Link to repository]


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